1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctttaatgttcaaattggaatgtgcacgtgttgtgatccctttctctacgtctcacaatagataaattgactagaacattttgtttcgattcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTTGCCAATCAGTGTTTCTCGAATGTTGCTGACTACGGTAAGGGTCGTCAGA
species | Physcomitrella patens |
transcript | PP1S207_68V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTTEST: gi|208388056|gb|DC933162.1|DC933162
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGNTT-CACCCTTAAAAA-TTTEST: gi|100386870|gb|BY988139.1|BY988139
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTTEST: gi|100447364|gb|CJ971663.1|CJ971663
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTTEST: gi|100385474|gb|BY969811.1|BY969811
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGNTGEST: gi|162255613|gb|FC431611.1|FC431611
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTT-
EST: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAG TATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
genomic: ACATTGCGTCTGCAGCTGCACTAAATAATGACGATATGGTGTATGCCCAGgtgaactgat ... tcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTT
ctacgtctcacaatagataaattgactagaacattttgtttcgattcttatgcagTATCGAGAACCAGGCGTGCTGATGTGGCGAGGTTTCACCCTTAAAGAGTTTGCCAATCAGTGTTTCTCGAATGTTGCTGACTACGGTAAGGGTCGTCAGA
aattgac putative branch site (score: 11)
ttcttat putative PPT
acaatagataaatt TA-rich tract