1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTTCGCCGTCGTGTGGTCCTTTCGCTTCCGTCTTGCGCGAACGCCAATTCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttgtgcttaactgcacgtctcgttttgttcatgttttatctacggaggtttacatgagattctgtgattttttttagacggatgtctcgcatg...
species | Physcomitrella patens |
transcript | PP1S207_68V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|162152382|gb|FC328569.1|FC328569
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|208388056|gb|DC933162.1|DC933162
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|100386870|gb|BY988139.1|BY988139
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|100447364|gb|CJ971663.1|CJ971663
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|100385474|gb|BY969811.1|BY969811
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|162255613|gb|FC431611.1|FC431611
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|100352194|gb|BY983086.1|BY983086
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACTAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|18346832|gb|BJ178877.1|BJ178877
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTCEST: gi|18352293|gb|BJ184347.1|BJ184347
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
EST: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAG TTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
genomic: TCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttg ... ttattcgcagTTTCTCGACTTTCCTGGGGCTAAGGTTGGGTTTATCAACAAAATCAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCGCCGTCGTGTGGTCCTTTCGCTTCCGTCTTGCGCGAACGCCAATTCTGCTCGAGTTCCTCTAGCGGCGACGAGAGCGAGGATCATCTTGATGAGgtttgcgttgtgcttaactgcacgtctcgttttgttcatgttttatctacggaggtttacatgagattctgtgattttttttagacggatgtctcgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT