1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTTGGTTCACAGAAGTTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggagtactgttagattggcaactatcactaggtcgaagccatttcgttataatatttatcatttggggttcaattccacattcatagttaatcg...
species | Physcomitrella patens |
transcript | PP1S207_52V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGGCTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|208367169|gb|DC947847.1|DC947847
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|37841139|gb|BJ599147.1|BJ599147
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|18363976|gb|BJ196049.1|BJ196049
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|37851281|gb|BJ609289.1|BJ609289
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGGTTCACAGAAGTTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggagtactgttagattggcaactatcactaggtcgaagccatttcgttataatatttatcatttggggttcaattccacattcatagttaatcg
- - - - - - - - - - CGAAGA
- - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - GATGGA