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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggcatctctttctatatggctcagcgagattttgtctctaatgatttttttgtgatcatggaaatgttaaccgcttggttcatctgttttcagtcgcagGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG

Basic information

species Physcomitrella patens
transcript PP1S207_52V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208398785|gb|DC920733.1|DC920733
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGTCGCAG                    
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGC-A-----AGgtaattttat ... tcagt
EST: gi|208367169|gb|DC947847.1|DC947847
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGTCGCAG                    
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGC-A-----AGgtaattttat ... tcagt
EST: gi|37841139|gb|BJ599147.1|BJ599147
EST:     TTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGTCGCAG                    
genomic: TTCGCCTGTTGGGTCCCTTTCTAGTACTGC-A-----AGgtaattttat ... tcagt
EST: gi|18363976|gb|BJ196049.1|BJ196049
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGTCGCAG                    
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGC-A-----AGgtaattttat ... tcagt
EST: gi|37851281|gb|BJ609289.1|BJ609289
EST:     CCCTTTGACNTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         GACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... tcagtcgcagGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtgatcatggaaatgttaaccgcttggttcatctgttttcagtcgcagGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG
                    tgttaac  putative branch site (score: 2)
                                      tctgttttc  putative PPT
                 aaatgttaa  TA-rich tract