Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgttttgcttgccgattgtatttttgttgcggtttgaaggttcatgcatcatcactttctggattccgttctcattcatgtgcatcgtatatctcagGGACGAAGTGGTAACTAAGGCTGCTATTGGAGTCATGGGTGATTTGGCTGACACTTTGGGGGCTAGCTCTGCCGCTTTGTTCCAACGTACAGTATTCTTC

Basic information

species Physcomitrella patens
transcript PP1S207_106V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208363515|gb|DC939734.1|DC939734
EST:     GCTGGACATATTCTGCAATTTATTCAGAATGTGTATCATGACAAAGACAG                         GGACGAAGTGGTAACTAAGGCTGCTATTGGAGTCATGGGTGATTTGGCTGA
genomic: GCTGGACATATTCTGCAATTTATTCAGAATGTGTATCATGACAAAGACAGgtatggataa ... tatatctcagGGACGAAGTGGTAACTAAGGCTGCTATTGGAGTCATGGGTGATTTGGCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcatcatcactttctggattccgttctcattcatgtgcatcgtatatctcagGGACGAAGTGGTAACTAAGGCTGCTATTGGAGTCATGGGTGATTTGGCTGACACTTTGGGGGCTAGCTCTGCCGCTTTGTTCCAACGTACAGTATTCTTC
                                             tatatct  TA-rich tract