1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCCTTCCCCCCCCTTCCCCACCTCCTCCGGCGCCACTACTGCTGCTTCTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatctcacctctctccctcttccctcactccctctcgtctctgctatccacttccctccttttctctcctcttcgcttcctctgctgccgactct...
species | Physcomitrella patens |
transcript | PP1S207_106V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|18348172|gb|BJ180219.1|BJ180219
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: TGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGNCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACEST: gi|18328027|gb|BJ160031.1|BJ160031
genomic: TGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACG-CCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGAC
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|18361575|gb|BJ193641.1|BJ193641
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|18373213|gb|BJ204815.1|BJ204815
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|67569419|gb|BJ942243.1|BJ942243
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: CTGCTGNCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|18348853|gb|BJ180902.1|BJ180902
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACGEST: gi|18365728|gb|BJ197805.1|BJ197805
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
EST: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG TGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... tttcttccagTGAAGGTAGGGAGATATTAACAGCGGTGAAAATATGGCGCTGGAGGTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTTCCCCCCCCTTCCCCACCTCCTCCGGCGCCACTACTGCTGCTTCTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatctcacctctctccctcttccctcactccctctcgtctctgctatccacttccctccttttctctcctcttcgcttcctctgctgccgactct
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