1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAGAGCGCAAAGGCATGAGAGGATGGTGAATACATCTATTGCTGAATGCTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACTgtaagttcgttttcctctgcgttgtttgaatccacaggattggtaacaatgccttgtttgaatagttgaacccccgtctcttcttgtgccgaagtttctgaactcgtctgttcgtctctgtgactccag
species | Physcomitrella patens |
transcript | PP1S100_248V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACT TTGTGGTACTTGAGATGTGAAACAACCATATCTAGTTTTATTCAACAGGAGEST: gi|162269296|gb|FC445827.1|FC445827
genomic: CTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACTgtaagttcgt ... gtgactccagTTGTGGTACTTGAGATGTGAAACAACCATATCTAGTTTTATTCAACAGGAG
EST: CTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACT TTGTGGTACTTGAGATGTGAAACAACCATATCTAGTTTTATTCAACAGGAG
genomic: CTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACTgtaagttcgt ... gtgactccagTTGTGGTACTTGAGATGTGAAACAACCATATCTAGTTTTATTCAACAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAGCGCAAAGGCATGAGAGGATGGTGAATACATCTATTGCTGAATGCTCCCCCAGTCGGGACGGTTCGGGACACTGGATCAAGACCGATGAAGACTgtaagttcgttttcctctgcgttgtttgaatccacaggattggtaacaatgccttgtttgaatagttgaacccccgtctcttcttgtgccgaagtttctgaactcgtctgttcgtctctgtgactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA