1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttccttgctactcgtgatttcttttgtgcgtctgttctgggaagtagattctactctctgatccgttgagaagctttcatatctatgttttgattagcagATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGGGGTCGTTCATGCCTCTCAAGGGTAATAGTACTGGAGTCCGCAAGCAACA
species | Physcomitrella patens |
transcript | PP1S100_248V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAAGTCAAGAAATCAG ATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGGEST: gi|18351068|gb|BJ183119.1|BJ183119
genomic: AAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAAGTCAAGAAATCAGgtgcacttca ... tgattagcagATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGG
EST: AAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAAGTCAAGAAATCAG ATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGG
genomic: AAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAAGTCAAGAAATCAGgtgcacttca ... tgattagcagATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGG
agattctactctctgatccgttgagaagctttcatatctatgttttgattagcagATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGGGGTCGTTCATGCCTCTCAAGGGTAATAGTACTGGAGTCCGCAAGCAACA
ttttgat putative branch site (score: 4)
ttttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttgctactcgtgatttcttttgtgcgtctgttctgggaagtagattctactctctgatccgttgagaagctttcatatctatgttttgattagcagATCCATTCGCGAGGAGTTGCAATGGCAGGGACCGTGGCACAGCGGGCATGGGGTCGTTCATGCCTCTCAAGGGTAATAGTACTGGAGTCCGCAAGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA