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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGTTGTCTGAATCACAGCAAAGCTTAATAGGCGTTGCCTTCCCTCGAGGCTCTCGATAACTTTCCATTCCGTTGCCTCCCGGGCTGCAACATGAAGgtatgggcttcagcgctgtcttcgggccacctctcatttacatgcctgcagcaagtgttggaattctttcaaagttggtgaacgtttgatgataatgttt...

Basic information

species Physcomitrella patens
transcript PP1S100_248V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345937|gb|BJ177980.1|BJ177980
EST:     AGGCTCTCGATAACTTTCCATTCCGTTGCCTCCCGGGCTGCAACATGAAG                         TTATCCGGGTGGGGAAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAA
genomic: AGGCTCTCGATAACTTTCCATTCCGTTGCCTCCCGGGCTGCAACATGAAGgtatgggctt ... tttattccagTTATTCGGGTGGGGAAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAA
EST: gi|18351068|gb|BJ183119.1|BJ183119
EST:     AGGCTCTCGATAACTTTCCATTCCGTTGCCTCCCGGGCTGCAACATGAAG                         TTATTCGGGTGGGGAAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAA
genomic: AGGCTCTCGATAACTTTCCATTCCGTTGCCTCCCGGGCTGCAACATGAAGgtatgggctt ... tttattccagTTATTCGGGTGGGGAAAATCCAAGGACCCTCAGCCGCCACTTTTACAGCAA