1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGgtgagctgctaacaaatctctgaatatatctctggatccgtcacaccgcggcgtccccctctcgtgcgctcatgctagccgcatgctcgctcacggggga...
species | Oryza sativa |
transcript | LOC_Os11g44600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG GTACGCAAAGAGAATATTATTTCCCAGGAAEST: gi|88327052|gb|CI676171.1|CI676171
genomic: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGgtgagctgct ... gcttgttaagGTACGCAAAGAGAATATTATTTCCCAGGAA
EST: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG GTACGCAAAGAGAATATTATTTCCCAGGAAAAGGTGCEST: gi|88582977|gb|CI699445.1|CI699445
genomic: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGgtgagctgct ... gcttgttaagGTACGCAAAGAGAATATTATTTCCCAGGAAAAGGTGC
EST: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG GTACGCAAAGAGAATATTATTTCCCAGGAAAAGGTGCTCCAAGCA
genomic: CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGgtgagctgct ... gcttgttaagGTACGCAAAGAGAATATTATTTCCCAGGAAAAGGTGCTCCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGgtgagctgctaacaaatctctgaatatatctctggatccgtcacaccgcggcgtccccctctcgtgcgctcatgctagccgcatgctcgctcacggggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acggggg