1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gactgtgtctgtctcttattattgagatcactgcatttctgcatctttctcctatcacgcccacactcattgcatgctaacgagtcttctttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAGAATGGCAGCGATGGCAGCAATATTGCAGAACTGATTGACAACGACATTG
species | Oryza sativa |
transcript | LOC_Os11g44600.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGTCAGACATCTGAA GGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAGEST: gi|88547473|gb|CI477768.1|CI477768
genomic: TGGTCAGACATCTGAAgtaagtgttg ... ttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAG
EST: GACATCCCTATTGGGTGCTATATTGGTCAGACATCTGAA GGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAGEST: gi|88548941|gb|CI478778.1|CI478778
genomic: GACATCCCTATTGGGTGCTATATTGGTCAGACATCTGAAgtaagtgttg ... ttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAG
EST: CATCCCTATTGGGTGCTATATTGGTCAGACATCTGAA GGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAG
genomic: CATCCCTATTGGGTGCTATATTGGTCAGACATCTGAAgtaagtgttg ... ttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAG
tttctcctatcacgcccacactcattgcatgctaacgagtcttctttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAGAATGGCAGCGATGGCAGCAATATTGCAGAACTGATTGACAACGACATTG
tgctaac putative branch site (score: 1)
tcttctttttttgt putative PPT
ttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactgtgtctgtctcttattattgagatcactgcatttctgcatctttctcctatcacgcccacactcattgcatgctaacgagtcttctttttttgtagGGTACTTCTTCTGGAGGCAATGCCTTGATCGGACTGATGAATATGTCACAGAATGGCAGCGATGGCAGCAATATTGCAGAACTGATTGACAACGACATTG
- - gtgtctg
- - - - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc