Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctccgatctcgatctctctctctctctctaagtaagaagggtacaagctttgttcatcatctgatgcgtgttctttgctattgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG

Basic information

species Oryza sativa
transcript LOC_Os11g44600.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88760536|gb|CI770092.1|CI770092
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGGT
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGGT
EST: gi|88581417|gb|CI698401.1|CI698401
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
EST: gi|88591807|gb|CI709862.1|CI709862
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAG
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAG
EST: gi|88368649|gb|CI651131.1|CI651131
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGGT
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTGGT
EST: gi|88765789|gb|CI774883.1|CI774883
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCG
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCG
EST: gi|88327052|gb|CI676171.1|CI676171
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
EST: gi|88589644|gb|CI708442.1|CI708442
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGC
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGC
EST: gi|88582977|gb|CI699445.1|CI699445
EST:     CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGT                         CGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
genomic: CTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTACTTCATCGTCCTCGTgtacgcctcc ... tgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagggtacaagctttgttcatcatctgatgcgtgttctttgctattgatgtgcagCGAGGGGAAGTCCAACCGCCGCATTCGTCGAGTG
                                          tattgat  putative branch site (score: 3)
                                          tattgat  TA-rich tract