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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttcttgccttgatagttatgttgattattgctacatatgtcactttttgtgaattttttgcttactgagttgctctttcaatttgttattgcagAATATAACCGTTATGTTATATCAAATCTGAGAACTTATTTTGGTCGTCGTAGTGCAATGGTTGGATATGAATTTTCGGATGTTGATTCTATCCGTGAAAG

Basic information

species Oryza sativa
transcript LOC_Os11g29490.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673676|gb|CB669951.1|CB669951
EST:     CAAAAATGAGCTTTTCTTGAATATCAATGGGATTTCTGATCTCTTTGTAG                         AATATAACCGTTATGTTATATCAAATCTGAGAACTTATTTTGGTCGT
genomic: CAAAAATGAGCTTTTCTTGAATATCAATGGGATTTCTGATCTCTTTGTAGgtctgcttct ... gttattgcagAATATAACCGTTATGTTATATCAAATCTGAGAACTTATTTTGGTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactttttgtgaattttttgcttactgagttgctctttcaatttgttattgcagAATATAACCGTTATGTTATATCAAATCTGAGAACTTATTTTGGTCGTCGTAGTGCAATGGTTGGATATGAATTTTCGGATGTTGATTCTATCCGTGAAAG
                   tgcttac  putative branch site (score: 2)
     ttttgtgaatttttt  TA-rich tract