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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGCATTGTTAACCATGCTATTGGACTTTTCGCACATTCACGCGATGGCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttattcccctgctcaatttccaccccaatgtgatatgtggcttttattgcaattgatttagacaaccacctgccaattctcgagtacaatgaact...

Basic information

species Oryza sativa
transcript LOC_Os11g29490.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87027536|gb|CI272301.1|CI272301
EST:     GCCACTGCTCTGGGCCTATTGTTAC-ATTTCTTCTGTTCTATCTCAACTG                         GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: gi|88264628|gb|CI368402.1|CI368402
EST:     ACAATTTCTTCTGTTCTATCTCAACTG                         GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
genomic: ACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: gi|86534832|gb|CI175038.1|CI175038
EST:     GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTG                         GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: gi|88845433|gb|CI084358.1|CI084358
EST:     GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTG                         GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG