1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagcatgctcaccttttacaatcgtagtagtgaaatttgggagttgcatatctgtcaagagttcaatttagtctaatctagttgtcacgttctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAGGCTGTTCACTGGTTGGACCGAGTGGATGGAGAGGTGCAGGAGGCTGCT
species | Oryza sativa |
transcript | LOC_Os11g29490.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|88264628|gb|CI368402.1|CI368402
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|88286769|gb|CI520079.1|CI520079
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|88275135|gb|CI395739.1|CI395739
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|86534832|gb|CI175038.1|CI175038
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|89178357|gb|CI391536.1|CI391536
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|88262775|gb|CI366549.1|CI366549
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGACCCTCATGTTGATCT GTGACCTGTGTAACCTTCCAAAGTTCAACATATTTGGGATAACCTGCAGGAEST: gi|88833086|gb|CI369976.1|CI369976
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: ATTTATCTGGCTCTACAACTTTTTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGGGGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGEST: gi|88845433|gb|CI084358.1|CI084358
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCT-GTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGG
EST: ATTNATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
gcatatctgtcaagagttcaatttagtctaatctagttgtcacgttctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAGGCTGTTCACTGGTTGGACCGAGTGGATGGAGAGGTGCAGGAGGCTGCT
gtctaat putative branch site (score: 3)
cgttcttt putative PPT
ttcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcatgctcaccttttacaatcgtagtagtgaaatttgggagttgcatatctgtcaagagttcaatttagtctaatctagttgtcacgttctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGAGGCTGTTCACTGGTTGGACCGAGTGGATGGAGAGGTGCAGGAGGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT