1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gagaaaaaaaagtgagaaaagatttttttttttgaaatttttaataaaggttacatacattagcagtttgatgttggtggccttcaacattgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGATGGGATCACTCCTTCACCGAGTACATTAAATACGAGATTGGATGGGAGT
species | Oryza sativa |
transcript | LOC_Os11g29490.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCCCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88301456|gb|CI597149.1|CI597149
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: CCGCCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAC -TGGGTGGAAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88364693|gb|CI612508.1|CI612508
genomic: CCGCC-TCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGEST: gi|88694254|gb|CI738292.1|CI738292
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGT-GGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGG
EST: GCCCCCTCCNGCTGTACGGCCCTACCCTCGTGGTCGCCCATCACCCCCAG CTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88397921|gb|CI583239.1|CI583239
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCCATCGTCCTGCTCTGGGGEST: gi|88393212|gb|CI616696.1|CI616696
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGC-ATCGTCCTGCTCTGGGG
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88362606|gb|CI608755.1|CI608755
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88300206|gb|CI582440.1|CI582440
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88362123|gb|CI607123.1|CI607123
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88575694|gb|CI669839.1|CI669839
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCCTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88726828|gb|CI750483.1|CI750483
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: CCGCCTCAAGCCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAC GTGGGTGGCAAGCTTCTCGCTACACTAAAGTGCATCGTCCTGCTCTGGGGAEST: gi|88395315|gb|CI611232.1|CI611232
genomic: CCGCCTCAAGC-TGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
EST: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAG GTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
genomic: GCCGCCTCAAGCTGTACGGGCCTAACCTCGTGGTCGCCCATCACCCCCAGgttcgctttg ... tgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGA
aaaggttacatacattagcagtttgatgttggtggccttcaacattgtgcttcagGTGGGTGGCAAGCTTCTTGCTACACTAAAGTGCATCGTCCTGCTCTGGGGATGGGATCACTCCTTCACCGAGTACATTAAATACGAGATTGGATGGGAGT
gtttgat putative branch site (score: 5)
atacatta TA-rich tract