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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGACGTGAACTCTCCTCTACCAAAGGGCATTGGCTGGGGCTGGGCAGGATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcggaggatattttatttgattttttttatttacatcttttgaagttggtgcatcactgcatgaacctaaaaacttgatatattgtctttcac...

Basic information

species Oryza sativa
transcript LOC_Os11g29490.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88264628|gb|CI368402.1|CI368402
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|88286769|gb|CI520079.1|CI520079
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|87027536|gb|CI272301.1|CI272301
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|88275135|gb|CI395739.1|CI395739
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|86534832|gb|CI175038.1|CI175038
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|89178357|gb|CI391536.1|CI391536
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|88262775|gb|CI366549.1|CI366549
EST:     ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGACCCTCATGTTGATCT                         GTGACCTGTGTAACCTTCCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
EST: gi|88833086|gb|CI369976.1|CI369976
EST:     ATTTATCTGGCTCTACAACTTTTTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGGGGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGG
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCT-GTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGG
EST: gi|88845433|gb|CI084358.1|CI084358
EST:     ATTNATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCT                         GTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA
genomic: ATTTATCTGGCTCTACAACTTTGTCTTGCTTTTGAGCCTCATGTTGATCTgtatgtatcg ... tctttggcagGTGACCTGTGTAACCTTGCAAAGTTCAACATATTTGGGATAACCTGCAGGA