1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaagtatttgattattgcttgcagctgtagtaaagtatcatgccaagcttaatttttaagctcaatacatgcatgggttactgaacaaacttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGGGCATTGGCTGGGGCTGGGCAGGATTTATCTGGCTCTACAACTTTGTCT
species | Oryza sativa |
transcript | LOC_Os11g29490.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACAATTTCTTCTGTTCTATCTCAACTG GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGEST: gi|87027536|gb|CI272301.1|CI272301
genomic: ACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: GCCACTGCTCTGGGCCTATTGTTAC-ATTTCTTCTGTTCTATCTCAACTG GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGEST: gi|86534832|gb|CI175038.1|CI175038
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTG GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGEST: gi|88845433|gb|CI084358.1|CI084358
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
EST: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTG GTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
genomic: GCCACTGCTCTGGGCCTATTGTTACAATTTCTTCTGTTCTATCTCAACTGgtgagttatt ... ttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAG
agcttaatttttaagctcaatacatgcatgggttactgaacaaacttattttcagGTGGCAACCGTCATTGCTGTTTATGGTGACGTGAACTCTCCTCTACCAAAGGGCATTGGCTGGGGCTGGGCAGGATTTATCTGGCTCTACAACTTTGTCT
gcttaat putative branch site (score: 4)
cttattttc putative PPT
aacaaacttatttt TA-rich tract