1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GTCCAGATGCAGTTCAGTTCATTGTCAACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagctttaaccccttatctcagccttgtatagttattagtttatacaatcattaaaatttgcacttttcatgtcactggtaccagccattaactactg...
species | Oryza sativa |
transcript | LOC_Os11g04980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTGEST: gi|33676001|gb|CF304240.1|CF304240
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTGEST: gi|58696224|gb|CK084911.1|CK084911
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTGEST: gi|58690407|gb|CK079094.1|CK079094
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTEST: gi|58611948|gb|CK039660.1|CK039660
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACT
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCEST: gi|33675052|gb|CF303291.1|CF303291
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTC
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTGEST: gi|58692164|gb|CK080851.1|CK080851
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: ACCATGGGACAGTAGAAGCTATTTTCTGGGTGGCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGGCATGTGTTCGCCTTATAGTGEST: gi|58663800|gb|CK052486.1|CK052486
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTGEST: gi|29670550|gb|CB666825.1|CB666825
genomic: ACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
EST: TTTCTGTGTGCCTC-CACACTAAGCACT CTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
genomic: TTTCTGTGTGCCTCAAACACTAAGCACTgtgagcttta ... tttattgcagCTGTTAAGCTTTATAACTCAAATGCCATGTGTTCGCCTTATAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCAGATGCAGTTCAGTTCATTGTCAACCATGCGACAGTAGAAGCTATTTTCTGTGTGCCTCAAACACTAAGCACTgtgagctttaaccccttatctcagccttgtatagttattagtttatacaatcattaaaatttgcacttttcatgtcactggtaccagccattaactactg
- - - - - - - - - - - - - - - - - - - - AGAAGC