1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaactataccattaacttagatactttcgtgtttggcatgactatttctagtcatatcttttgcacgaaatcaattttttcccttttcagtaattctaactggctagttgtttattactctgtag
species | Oryza sativa |
transcript | LOC_Os11g04980.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCAEST: gi|29671403|gb|CB667678.1|CB667678
genomic: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
EST: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCAEST: gi|29679207|gb|CB675482.1|CB675482
genomic: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
EST: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCAEST: gi|109974356|gb|DT806865.1|DT806865
genomic: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
EST: CCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTGTTTCAEST: gi|58688175|gb|CK076862.1|CK076862
genomic: CCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
EST: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCEST: gi|29670550|gb|CB666825.1|CB666825
genomic: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTC
EST: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGC AATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
genomic: CCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaac ... tactctgtagAATTACAAATGCTGTGAAGGAGTCTGGAGGGTTGAAAGAAAGATTTTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAATTTGAAGCTGATGGATGATCTGGCTGCACTGAGACCAACAGTATTTTCTAGCGTACCCCGGCTATATAACAGAATTTATGCTGCgtaatacaactataccattaacttagatactttcgtgtttggcatgactatttctagtcatatcttttgcacgaaatcaattttttcccttttcagtaattctaactggctagttgtttattactctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC