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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTGAAGAGAAGTCAAGCCAGCATTTTGGAACATATGATTTTGATAGCTCTCCTTTTGATTGGGGTGATGACTACAGGCTTCCGAATTTGCCTGAGgtactattatcatttggtaggattgacaagatgttccaaacatgaagttctcaattttttgtttctttaatctag

Basic information

species Oryza sativa
transcript LOC_Os09g29404.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G150796_T02 (Zea mays), 5'ss of exon 6
GGTTGCTGAAGAGAAGTCAAGCCAGCATTTTGGAACATATGATTTTGATAGCTCTCCTTTTGATTGGGGTGATGACTACAGGCTTCCGAATTTGCCTGAGgtacta-------ttatcatttggtaggattgacaagatgttccaaacatgaagttctca--attttttgtttctttaatctag
 ||||   |||||||| ||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||  | || | |||||| ||||||||||||||| ||       |||||| ||   |   |  |||| || | ||||||| | | ||||||  |  ||||  |||||||||||||
TGTTGAAAAAGAGAAGCCAAGCCAGCTTTTCGGAACATATGATTTCGATAGCTCACCTTTTGACTGGGGTGACAATTATAAGCTTCCTAATTTGCCTGAGgtattaagatcttttatcaattatcatagtgcacaaaatatcccaaacacgtaattctcaccacattttcgttctttaatctag

upper sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G385578_T01 (Zea mays), 5'ss of exon 4
GGTTGCTGAAGAGAAGTCAAGCCAGCATTTTGGAACATATGATTTTGATAGCTCTCCTTTTGATTGGGGTGATGACTACAGGCTTCCGAATTTGCCTGAGgtactattatcatttggtaggattgacaagatgttccaaacatgaagttctca--attttttgtttctttaatctag
  |||   |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||  | || | |||||| ||||||||||||||| ||  || ||||   |  ||  || | || |  |||||  | | || |||  |  ||||  |||||||||||||
--TTGAAAAAGAGAAGCCAAGCCAGCTTTTCGGAACATATGATTTTGATAGCTCCCCTTTTGACTGGGGTGACAATTATAAGCTTCCTAATTTGCCTGAGgtattaagattatttatcataatgcactaaatatctcaaacgcgtaattgtcaccacatttttgttctttaatctag

upper sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv18s0001g06520.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGCTGAAGAGAAGTCAAGCCAGCATTTTGGAACATATGATTTTGATAGCTCTCCTTTTGATTGGGGTGATGACTACAGGCTTCCGAATTTGCCTGAGgta--ctattatcatttggtaggattgaca-agatgttccaaacatgaagttctcaattttttgtttctttaatctag---------------------------------------------------------------------------------------------------------------------
|| ||||    | ||||    | |   | | ||||| ||||||||||||||||  |||||||||||||| ||  | |||| | |||| | | | |||||||||   || |     ||    | |||  |  || |||  ||  ||  |     ||  ||| |   |   ||   |||                                                                                                                      
GGATGCTAGCAATAAGTGGTCCAAATTTCTAGGAACTTATGATTTTGATAGCTTGCCTTTTGATTGGGGAGACAATTACAAGGTTCCAAGTATACCTGAGgtaatttagtggggcttaaatgcattatctcagttgtgacatgcaaaagaaattctttttctgcatatgttgtcctacgagatacaaatctgacagctctctctctctctctccccctccctcttcccccccactttccagtttgtgttttagttgtatatcttgaccttattatttttgctattgtctttgcag