1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagtttgttgatcactttcgtttatgcaccttattatggtatttgtttatgatgctccaaaatccaaattcttggcttctgactttcattgccattttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACATGACTATTTTGTGGACGCTGTAATTCCCCCACCACCACACCATAAATGT
species | Oryza sativa |
transcript | LOC_Os09g29404.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TGTCACGAGGATTTTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCAC AGTACATGATCACAACTCCGGTGGAGATATCTATTTGGCATTCAATGCACAEST: gi|29640551|gb|CB645560.1|CB645560
genomic: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCACgtaagtttgt ... tttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACA
EST: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCAC AGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACAEST: gi|218486693|gb|FG956345.1|FG956345
genomic: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCACgtaagtttgt ... tttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACA
EST: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCAC AGTACATGATCACAACTCCGGTGGAGATATCTATTTGGCATTCAATGCACAEST: gi|58678014|gb|CK066701.1|CK066701
genomic: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCACgtaagtttgt ... tttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACA
EST: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCAC AGTACATGATCACAACTCCGGTGGAGATATCTATTTGGCATTCAATGCACAEST: gi|58594962|gb|CF993270.1|CF993270
genomic: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCACgtaagtttgt ... tttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACA
EST: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCAC AGTAGAGTGATCACAACTCCGGTGGAGATATCTATTTGGCATTCAATGCAC
genomic: TGGCACGAGGATTGTTGGGAGAACCAGGAAAGCAAATTTTTGGCATTCACgtaagtttgt ... tttactgtagAGTACA-TGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCAC
gatgctccaaaatccaaattcttggcttctgactttcattgccattttactgtagAGTACATGATCACAACTCTGGTGGAGATATCTATTTGGCATTCAATGCACATGACTATTTTGTGGACGCTGTAATTCCCCCACCACCACACCATAAATGT
ttctgac putative branch site (score: 16)
ccatttt putative PPT
aaattctt TA-rich tract