1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACGCTCAAAGTATGATCTCATAGCCAACGTTGTCCATGATGGCAAGCCAGGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcctcagcttattcctagcatgggtatttattttgtgcctgcagttgagagggccttgtaaatcattttccattccttattttag
species | Oryza sativa |
transcript | LOC_Os09g24250.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGACCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|33687261|gb|CF315500.1|CF315500
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|29661389|gb|CB657664.1|CB657664
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|88224775|gb|CI224624.1|CI224624
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|86427408|gb|CI072505.1|CI072505
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|29662857|gb|CB659132.1|CB659132
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|29629631|gb|CB634640.1|CB634640
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCEST: gi|58596598|gb|CK007126.1|CK007126
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
EST: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTG GTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
genomic: GGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcct ... cttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGCTCAAAGTATGATCTCATAGCCAACGTTGTCCATGATGGCAAGCCAGGCGAGGGATGTTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCTTGgtatgctcctcagcttattcctagcatgggtatttattttgtgcctgcagttgagagggccttgtaaatcattttccattccttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG