1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggagtggaaccatattgggtgaggcgatatatttgaaatcttgacattcaacttttatgttttttgaactctaaactcaaaagcttgtgtgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGGTAGTGCGACCCTCCATTGCTCGTATGAGGTATCGAGTCATCAGACTTC
species | Oryza sativa |
transcript | LOC_Os09g24250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGEST: gi|86902109|gb|CI300348.1|CI300348
genomic: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
EST: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGEST: gi|33683169|gb|CF311408.1|CF311408
genomic: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
EST: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGEST: gi|29661389|gb|CB657664.1|CB657664
genomic: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
EST: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGEST: gi|29629631|gb|CB634640.1|CB634640
genomic: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
EST: TCAAGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGEST: gi|58596598|gb|CK007126.1|CK007126
genomic: TCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
EST: CACCTCCACCTCTTTGCAGGGACGCCATGGAGAAAAATATCATTCCACAG GTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
genomic: CACCTCCACCTCTTTTCAAGGACGCCATGGAGAAAAATATCATTCCACAGgtttgttata ... tgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAG
cattcaacttttatgttttttgaactctaaactcaaaagcttgtgtgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGGTAGTGCGACCCTCCATTGCTCGTATGAGGTATCGAGTCATCAGACTTC
ctctaaa putative branch site (score: 21)
aacttttatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagtggaaccatattgggtgaggcgatatatttgaaatcttgacattcaacttttatgttttttgaactctaaactcaaaagcttgtgtgatgtccagGTACCACTCTTTAATATATTGAAGAAGTTTGATGGCGAGACAGTTACAGAGGTAGTGCGACCCTCCATTGCTCGTATGAGGTATCGAGTCATCAGACTTC
- - - - aaccata
- - - - - - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg