1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggttttttagtgagatagctgcatgccagcatatttgtgctgttcctctacctccacaaatactcaaaagttaacatgttgctttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGGTTCCAGATTGGTGTTCAGTCTGATCCAGTGGAATTTATGTCATGGCTCT
species | Oryza sativa |
transcript | LOC_Os09g24250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAG GTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGGEST: gi|33380810|gb|CF196153.1|CF196153
genomic: AACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAGgttggttttt ... ttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGG
EST: TTGGAGAACTAACTCGCAAAATCTGGCATGCGAGGAACTTCAAGGGCCAG GTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATANGANNEST: gi|33683169|gb|CF311408.1|CF311408
genomic: TTGGAGAACTAACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAGgttggttttt ... ttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGG
EST: GGAGAACTAACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAG GTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGGEST: gi|58658174|gb|CK046854.1|CK046854
genomic: GGAGAACTAACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAGgttggttttt ... ttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGG
EST: TTGGAGAACTAACTCGCAGGATCTGGCATGCAAGGAACTTCAAGGGCCAG GTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGG
genomic: TTGGAGAACTAACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAGgttggttttt ... ttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGG
gctgttcctctacctccacaaatactcaaaagttaacatgttgctttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGGTTCCAGATTGGTGTTCAGTCTGATCCAGTGGAATTTATGTCATGGCTCT
agttaac putative branch site (score: 28)
ttgcttttt putative PPT
aaaagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttttttagtgagatagctgcatgccagcatatttgtgctgttcctctacctccacaaatactcaaaagttaacatgttgctttttgtgcagGTTAGTCCACATGAGTTTCTGCAAGCAGTTATGAAGGCCAGTGATAAGAGGTTCCAGATTGGTGTTCAGTCTGATCCAGTGGAATTTATGTCATGGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA