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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCTACCTGAGCTCCAAGGTCACAACGGAAGGCGGCTTCGAGGGCATCATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCACgtacgtataccaacattattttacaacttacatatatatgtataatgcacaatgcatgcacatacaaatgatatagtatttcctatgtttcaatttatcc...

Basic information

species Oryza sativa
transcript LOC_Os08g44640.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673996|gb|CB670271.1|CB670271
EST:     ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCAC                         CTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT
genomic: ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCACgtacgtatac ... aaatatatagCTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT
EST: gi|14571374|gb|BI118742.1|BI118742
EST:     ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCAC                         CTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT
genomic: ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCACgtacgtatac ... aaatatatagCTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT
EST: gi|29673997|gb|CB670272.1|CB670272
EST:     ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCAC                         CTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT
genomic: ATGAACACCGTCATCAGGGATAAGCTCCGGATCATACCCAAAAACGTCACgtacgtatac ... aaatatatagCTGGAGCGAGCAGTCAGACGATGTGTTCGAAGCTCTTGCAGGAGACTTCAT