1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agggatggagggagcttactaggacaggcaggtgaacttgtgtagtggcttcttcaatgtttgtcgatgctgaaatctattttccttctcttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACACAATCTCCTGCTCAGTAGAAAAGAGGAGGATGACACTACATGCTGACAC
species | Oryza sativa |
transcript | LOC_Os08g44640.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATG GTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACAEST: gi|29673997|gb|CB670272.1|CB670272
genomic: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATGgtaagtagta ... ttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACA
EST: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATG GTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACAEST: gi|18387664|gb|BM420862.1|BM420862
genomic: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATGgtaagtagta ... ttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACA
EST: ATCTGTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATG GTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACACTTACEST: gi|33683929|gb|CF312168.1|CF312168
genomic: ATCT-TACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATGgtaagtagta ... ttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACA-TTAC
EST: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATG GTACCAATAGACAACCCCTTGCCCTGCATTGAAGATGCTTGGTGACATTAC
genomic: AATCTTACAAGAATCTCAAATTCTACTGGATACTGGGAGCTGGCCACATGgtaagtagta ... ttgctgacagGTACCAATAGACAACCC-TTGCCCTGCATTGAAGATGCTTGGTGACATTAC
tggcttcttcaatgtttgtcgatgctgaaatctattttccttctcttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACACAATCTCCTGCTCAGTAGAAAAGAGGAGGATGACACTACATGCTGACAC
tctattttccttctct CT-rich tract
aaatctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggatggagggagcttactaggacaggcaggtgaacttgtgtagtggcttcttcaatgtttgtcgatgctgaaatctattttccttctcttgctgacagGTACCAATAGACAACCCTTGCCCTGCATTGAAGATGCTTGGTGACATTACACAATCTCCTGCTCAGTAGAAAAGAGGAGGATGACACTACATGCTGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG