1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taggtgtaatttcttgtattacattttcattatttacccctgagaggtcttggcttggggagtcgatttcagttggactgatttaattttaacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGAGCTGGCCCATCAGTTGGAATCGTCATTTCTTTCTACGAGGTTGTGAAG
species | Oryza sativa |
transcript | LOC_Os08g29720.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|29646262|gb|CB651269.1|CB651269
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86522457|gb|CI162663.1|CI162663
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|87007018|gb|CI275326.1|CI275326
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: TGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86494625|gb|CI137258.1|CI137258
genomic: TGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86499881|gb|CI142514.1|CI142514
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTATTGGTCCACGTGTAGCACGEST: gi|87015826|gb|CI279578.1|CI279578
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|29639863|gb|CB644872.1|CB644872
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|29661211|gb|CB657486.1|CB657486
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86500551|gb|CI143184.1|CI143184
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86502542|gb|CI145175.1|CI145175
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86859418|gb|CI278837.1|CI278837
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|29680568|gb|CB676843.1|CB676843
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGTCCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86493384|gb|CI136017.1|CI136017
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGNCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|87019187|gb|CI277903.1|CI277903
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|88244722|gb|CI243844.1|CI243844
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: GGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86539697|gb|CI179903.1|CI179903
genomic: GGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: ACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|29677505|gb|CB673780.1|CB673780
genomic: ACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86600100|gb|CI258440.1|CI258440
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|86494335|gb|CI136968.1|CI136968
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|33683082|gb|CF311321.1|CF311321
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: AAAAGGCAATGAGAATGACCACAAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAA-G---GTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|88197385|gb|CI196692.1|CI196692
genomic: AAAAGGCAATGAGAATGACCAC-AAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGEST: gi|25807715|gb|CA763676.1|CA763676
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCCCCGGTGTTGGTCCACGTGTAGCACGEST: gi|88228108|gb|CI227588.1|CI227588
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
EST: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAG CTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
genomic: CAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATATTTGGAGgtatgtcttc ... aacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACG
ggtcttggcttggggagtcgatttcagttggactgatttaattttaacctggcagCTCTGGAGGTATGAAAGGCTTGTTCACCGGTGTTGGTCCACGTGTAGCACGAGCTGGCCCATCAGTTGGAATCGTCATTTCTTTCTACGAGGTTGTGAAG
ttttaac putative branch site (score: 76)
actgatttaattttaa TA-rich tract