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gtatatctccattggaagtttctggttattagtatttgtgtttctgtgaaaccaattatgtctataatttttatttttgggcatacaatttgacaaatgtaataatttctttctcacttaaaagcacctaacaatcactattctatgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG
species | Oryza sativa |
transcript | LOC_Os08g29720.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|218497482|gb|FG960434.1|FG960434
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|33683081|gb|CF311320.1|CF311320
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|29661210|gb|CB657485.1|CB657485
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|218485410|gb|FG945021.1|FG945021
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|58693531|gb|CK082218.1|CK082218
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|58672713|gb|CK061399.1|CK061399
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|25797756|gb|CA753717.1|CA753717
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|29680567|gb|CB676842.1|CB676842
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|218496315|gb|FG954193.1|FG954193
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACAEST: gi|29677504|gb|CB673779.1|CB673779
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
EST: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAG GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
genomic: TGGCTTGCATTGCTTGTTCCCCAATTGAGTTGGCAAGGACACGGATGCAGgtatatctcc ... atgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACA
taataatttctttctcacttaaaagcacctaacaatcactattctatgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG
acctaac putative branch site (score: 53)
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctccattggaagtttctggttattagtatttgtgtttctgtgaaaccaattatgtctataatttttatttttgggcatacaatttgacaaatgtaataatttctttctcacttaaaagcacctaacaatcactattctatgttcacagGCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA