1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgtgactttaattcctttttatagttttatgcaagtatcgatttctagagcacagagaatttaacacttttggttaattggttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAGTACCAACT
species | Oryza sativa |
transcript | LOC_Os08g29720.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|29661210|gb|CB657485.1|CB657485
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|7273806|gb|AU083350.1|AU083350
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTAEST: gi|58693531|gb|CK082218.1|CK082218
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTA
EST: GCTTTCAGTACAAGGGAACAC-TGATGTATTCTTGAGAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|58672713|gb|CK061399.1|CK061399
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|25797756|gb|CA753717.1|CA753717
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|58607537|gb|CK035570.1|CK035570
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|7274031|gb|AU083575.1|AU083575
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAN-AEST: gi|29680567|gb|CB676842.1|CB676842
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAEST: gi|29677504|gb|CB673779.1|CB673779
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
EST: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAG GAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
genomic: GCTTTCAGTACAAGGGAACACTTGATGTATTCTTGAAAGTTGTTAGACAGgtaatgtgac ... gttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCA
tatcgatttctagagcacagagaatttaacacttttggttaattggttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAGTACCAACT
aatttaacactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgactttaattcctttttatagttttatgcaagtatcgatttctagagcacagagaatttaacacttttggttaattggttgttacagGAAGGATTTGGTAGATTATGGAGAGGTACAAATGCAGGCTTGGCGTTAGCAGTACCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG