1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTGCTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAGgtctgcacattctttcccacttccttcgtttttttctgcaataaatattcaaaagaatattgtttctgttttaacatcccaatcacatgccccatggtgcactatttatttaattttcttgccattgtgtacatcttgtttgtttcttttctgtttatacttcgcattaattatatcatttttcag
species | Oryza sativa |
transcript | LOC_Os08g29720.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAG AAGGATACGCAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGATEST: gi|29661210|gb|CB657485.1|CB657485
genomic: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAGgtctgcacat ... catttttcagAAGGATACGCAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGAT
EST: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAG AACGATACGCAAAAGGCAATGAGAATGEST: gi|218485410|gb|FG945021.1|FG945021
genomic: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAGgtctgcacat ... catttttcagAAGGATACGCAAAAGGCAATGAGAATG
EST: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAG AAGGATACGCAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGAT
genomic: CTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAGgtctgcacat ... catttttcagAAGGATACGCAAAAGGCAATGAGAATGACCACAAGGCAAACATTAGCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTGCTGGTGCTACATGCCCTCTAGATGTTGCTAAGACAAGGAGACAAATAGAGgtctgcacattctttcccacttccttcgtttttttctgcaataaatattcaaaagaatattgtttctgttttaacatcccaatcacatgccccatggtgcactatttatttaattttcttgccattgtgtacatcttgtttgtttcttttctgtttatacttcgcattaattatatcatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA