1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaatccctgttctgtcacttagtagttatgtttttgtttgctaatgtgcatgccagtatcatttgctaaattcattttaaaattaatggtatcttaacttactatcattgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTG
species | Oryza sativa |
transcript | LOC_Os08g29720.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCG ATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTEST: gi|29661210|gb|CB657485.1|CB657485
genomic: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccct ... ttgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGT
EST: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCG ATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTEST: gi|218485410|gb|FG945021.1|FG945021
genomic: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccct ... ttgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGT
EST: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCG ATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTEST: gi|218496315|gb|FG954193.1|FG954193
genomic: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccct ... ttgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGT
EST: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCG ATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTEST: gi|29677504|gb|CB673779.1|CB673779
genomic: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccct ... ttgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGT
EST: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCG ATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTA
genomic: TTGCTCGGGATGTTCCTTTCTCTGCTATATGCTGGTCAACACTGGAGCCGgtaaatccct ... ttgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTA
ttgctaaattcattttaaaattaatggtatcttaacttactatcattgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTG
aacttac putative branch site (score: 2)
aaattcattttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatccctgttctgtcacttagtagttatgtttttgtttgctaatgtgcatgccagtatcatttgctaaattcattttaaaattaatggtatcttaacttactatcattgtatgcagATTCGAAGAAAGCTGCTTGGTATCGTCGGAGAAGAAGGTGATGCAGCTAGTGTGCTGGGTGCAAACTTTGCAGCTGGCTTTGTAGCAGGTAGTCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG