1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgttcatttcaatacataatggattattcttgttcatgtttattgcaaccttgatattcatagtaggatttgtcaatttcaagtatctatatctctgttctaacaaatgaaacagtctattaaggaaatgaatcctactattaatgcatttatactgaaacag
species | Oryza sativa |
transcript | LOC_Os08g29720.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGEST: gi|33683081|gb|CF311320.1|CF311320
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|29661210|gb|CB657485.1|CB657485
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|218485410|gb|FG945021.1|FG945021
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|25797756|gb|CA753717.1|CA753717
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|29680567|gb|CB676842.1|CB676842
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|218496315|gb|FG954193.1|FG954193
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGGEST: gi|29677504|gb|CB673779.1|CB673779
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
EST: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATG CACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
genomic: GAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgt ... actgaaacagCACAAAATTATCGTGCTCTTTGGACGGGTGTGGGTGCACAACTTGCTCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATAAAGAATTTCGTCCTGGAGTAAAGCCTCCTGGAATGTGGAAAACATTGCTTGGCGTTGTTTCACCACTTGCAAGCTCAACTCAGAATGgttagtttgttcatttcaatacataatggattattcttgttcatgtttattgcaaccttgatattcatagtaggatttgtcaatttcaagtatctatatctctgttctaacaaatgaaacagtctattaaggaaatgaatcctactattaatgcatttatactgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA