1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatatttggggcgaactcggttaagttccgttatctgaagaaattatcatctgaatgtggttgaatttgctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTA
species | Oryza sativa |
transcript | LOC_Os08g16930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|86422527|gb|CI060100.1|CI060100
genomic: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: AACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|86494499|gb|CI137132.1|CI137132
genomic: AACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|87034326|gb|CI188950.1|CI188950
genomic: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: CTGCTCCAAGAGCATCTCCGGTGATGGACCTCAACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|86502352|gb|CI144985.1|CI144985
genomic: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|88831990|gb|CI014549.1|CI014549
genomic: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTEST: gi|87034020|gb|CI187382.1|CI187382
genomic: CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
EST: GAGGCCTGCGAGCCG AGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
genomic: GAGGCCTGCGAGCCGgtaatatttg ... ctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTT
gttccgttatctgaagaaattatcatctgaatgtggttgaatttgctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTA
tttgctctttcc CT-rich tract
aagaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttggggcgaactcggttaagttccgttatctgaagaaattatcatctgaatgtggttgaatttgctctttccagAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG