1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagggcctgaactcatcatcttctccagtgtgatttacatgcctggatgattatgctctacgacaatgcaaacatgttgatattgtctcattatcctgcgcataattgtgccgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCT
species | Oryza sativa |
transcript | LOC_Os08g16930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCGA GTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTEST: gi|88424323|gb|CI581878.1|CI581878
genomic: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcct ... cgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
EST: AGATTACAGATGGACAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA GTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTEST: gi|86898693|gb|CI292461.1|CI292461
genomic: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcct ... cgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
EST: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA GTTTTTGCGGAAAAGGTACAEST: gi|38473252|gb|CF957384.1|CF957384
genomic: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcct ... cgcgctgtagGTTTTTGCGGAAAAGGTACA
EST: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA GTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
genomic: AGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAgtaagggcct ... cgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTT
tgcaaacatgttgatattgtctcattatcctgcgcataattgtgccgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCT
tgttgat putative branch site (score: 31)
ttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggcctgaactcatcatcttctccagtgtgatttacatgcctggatgattatgctctacgacaatgcaaacatgttgatattgtctcattatcctgcgcataattgtgccgcgctgtagGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA