1 5' 3' | 2 5' 3' | 3 5' 3' |
...tccacaaatgtggttcttgcaagtttgatggtgtttagtgtccatctcagttacttctattatgatgtttgctgatgattagctgtgttgggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA
species | Oryza sativa |
transcript | LOC_Os08g16930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAG GAAACTGAAGCAAAGAAGAAGAGATTACAGATGGACAAGCTCAAGAAACAGEST: gi|86898693|gb|CI292461.1|CI292461
genomic: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGgtgggtgggt ... ggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAG
EST: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAG GAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGEST: gi|38473252|gb|CF957384.1|CF957384
genomic: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGgtgggtgggt ... ggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAG
EST: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAG GAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGEST: gi|88665082|gb|CI708620.1|CI708620
genomic: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGgtgggtgggt ... ggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAG
EST: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAG GAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAG
genomic: CGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGgtgggtgggt ... ggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAG
ctcagttacttctattatgatgtttgctgatgattagctgtgttgggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA
tgctgat putative branch site (score: 41)
ttctattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacaaatgtggttcttgcaagtttgatggtgtttagtgtccatctcagttacttctattatgatgtttgctgatgattagctgtgttgggttacccagGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-ccacaaa
- - - - - - - tcttgca
- - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg