1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaagattatgccttccttaattatatgccttgcaagtagggtgttaggcttgtcttggtgcttgctgactcttgctgttgaattaaccttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTGTGGTTTG
species | Oryza sativa |
transcript | LOC_Os08g12449.9 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGEST: gi|218501117|gb|FG969544.1|FG969544
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG GTATTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGEST: gi|218497006|gb|FG952577.1|FG952577
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGEST: gi|88211704|gb|CI211344.1|CI211344
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: TGGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGEST: gi|88486859|gb|CI424130.1|CI424130
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
EST: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG GTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGG
aggcttgtcttggtgcttgctgactcttgctgttgaattaaccttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTGTGGTTTG
aattaac putative branch site (score: 2)
ccttttgctt CT-rich tract
ttgaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagattatgccttccttaattatatgccttgcaagtagggtgttaggcttgtcttggtgcttgctgactcttgctgttgaattaaccttttgcttgcagGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCTAGGACTTGGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTGTGGTTTG
- - - - tgccttc
- - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt