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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCAAGAAAACCCATCCAATGGCGCAGCGATCTTGGAGATCGACATCGTGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtcagtcaaattccatgcatgaatagcctccctagatagcttttgacctcttgcatgcaccgtactag

Basic information

species Oryza sativa
transcript LOC_Os08g12449.9
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88358004|gb|CI650740.1|CI650740
EST:     TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: gi|218485628|gb|FG954877.1|FG954877
EST:     TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: gi|218501117|gb|FG969544.1|FG969544
EST:     TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: gi|218497006|gb|FG952577.1|FG952577
EST:     TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: gi|88211704|gb|CI211344.1|CI211344
EST:     TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: gi|218482913|gb|FG954573.1|FG954573
EST:     TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG                         TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT