1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcgtcagtcaaattccatgcatgaatagcctccctagatagcttttgacctcttgcatgcaccgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCC
species | Oryza sativa |
transcript | LOC_Os08g12449.9 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATEST: gi|218485628|gb|FG954877.1|FG954877
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATEST: gi|218501117|gb|FG969544.1|FG969544
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATEST: gi|218497006|gb|FG952577.1|FG952577
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATEST: gi|88211704|gb|CI211344.1|CI211344
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATEST: gi|218482913|gb|FG954573.1|FG954573
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
EST: TCTTCTCCAACTCCATTCAACCGCTTCCATCATCGATTCCATTCTCTCCG TGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
genomic: TGTTCTCCAACTCCATTCAATCGCTTCCATCATCGATTCCATTCTCTCCGgtgagcgtca ... accgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCAT
catgcatgaatagcctccctagatagcttttgacctcttgcatgcaccgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCC
ttttgac putative branch site (score: 3)
atgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgtcagtcaaattccatgcatgaatagcctccctagatagcttttgacctcttgcatgcaccgtactagTGACTCCCCTTACAGATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG