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...tctcagatatttatattatctgctatcacagatatgatgaactgtataatatatctgaaacatgtctagtatatctctgataatcttaagtatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCGTCTCATGGAGTCAAGACCCTTATTTACTCTAGTACATGTGCCACCTAT
species | Oryza sativa |
transcript | LOC_Os08g03570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAG GTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCEST: gi|218499746|gb|FG949515.1|FG949515
genomic: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAGgtaagtcatt ... tatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGC
EST: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAG GTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCEST: gi|29660517|gb|CB656792.1|CB656792
genomic: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAGgtaagtcatt ... tatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGC
EST: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAG GTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCEST: gi|117233153|gb|CT848014.1|CT848014
genomic: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAGgtaagtcatt ... tatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGC
EST: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAG GTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGC
genomic: CACTTTGCTGCTGTTGCCTATGTGGGTGAGAGTACATTGGAACCCCTTAGgtaagtcatt ... tatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGC
ataatatatctgaaacatgtctagtatatctctgataatcttaagtatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCGTCTCATGGAGTCAAGACCCTTATTTACTCTAGTACATGTGCCACCTAT
ctctgat putative branch site (score: 28)
ataatcttaagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcagatatttatattatctgctatcacagatatgatgaactgtataatatatctgaaacatgtctagtatatctctgataatcttaagtatttaacagGTACTATCACAATATTACATCGAACACCTTATTGATTTTGGAGGCTATGGCGTCTCATGGAGTCAAGACCCTTATTTACTCTAGTACATGTGCCACCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - -atctgct
- - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt