1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aattgacttctcttgtcaaattatctccattctgcatttttactcatgcatttcttgtgctgtcaatagtatattctaatatatgtatgattgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCAACATTAAAATTGAGTACCTCAGCAGGAGGCCAGGGGACTATGCTGAAGT
species | Oryza sativa |
transcript | LOC_Os08g03570.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAG GTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCAEST: gi|86849346|gb|CI297804.1|CI297804
genomic: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAGgtttgacaat ... ttgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCA
EST: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAG GTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAEST: gi|8956295|gb|BE230098.1|BE230098
genomic: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAGgtttgacaat ... ttgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGA
EST: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAG GTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCA
genomic: CAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAGgtttgacaat ... ttgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCA
atgcatttcttgtgctgtcaatagtatattctaatatatgtatgattgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCAACATTAAAATTGAGTACCTCAGCAGGAGGCCAGGGGACTATGCTGAAGT
ttctaat putative branch site (score: 30)
ttgctttc putative PPT
aatagtatattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgacttctcttgtcaaattatctccattctgcatttttactcatgcatttcttgtgctgtcaatagtatattctaatatatgtatgattgctttcagGTCGTTCAGTCAAGGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCAACATTAAAATTGAGTACCTCAGCAGGAGGCCAGGGGACTATGCTGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg