1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgacgggtgaaaaattttgtcacgagagatgtgagagtgagctactaactacaacgactgtgtgtcgttaattaatttgtgcatgcattggcatgcagGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCT
species | Oryza sativa |
transcript | LOC_Os06g45540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
actaactacaacgactgtgtgtcgttaattaatttgtgcatgcattggcatgcagGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCT
ttaattaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgacgggtgaaaaattttgtcacgagagatgtgagagtgagctactaactacaacgactgtgtgtcgttaattaatttgtgcatgcattggcatgcagGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
tgtgacg
- - - - gtgaaaaa
- - - - - - - - - - - - - - - - - - - - -agctact
- - - - - - - - - - - - - - - - - - - - - - - - aactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc