1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAGgtaaattgaacggcaataaaaactctgaaactaatctgttcagttttactattatgtagagctaattattaatgttggttctaatttgatttcag
species | Oryza sativa |
transcript | LOC_Os06g45540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTTCTTTTGTTCAG CCATACACGATCAACAGCGCAAAGGTGATATTTCTTAAGGCCAAG-CCTCEST: gi|88430800|gb|CI596914.1|CI596914
genomic: TGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTT-GTTCAGgtaaattgaa ... ttgatttcagCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAAG-CCAAGGCCTC
EST: TTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAG CCATACACGATCAACAGCGCAAAGGTGATATTTCTGAAGCCAAGGGCTCAG
genomic: TTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAGgtaaattgaa ... ttgatttcagCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAAGCCAAGGCCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAGgtaaattgaacggcaataaaaactctgaaactaatctgttcagttttactattatgtagagctaattattaatgttggttctaatttgatttcag
- - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA