1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcaaacgatgggtccgaagattcttttactagcactagaattaaacggtaccgtacgtataagtatactgtgcattgaagtgcttatacgtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAG
species | Oryza sativa |
transcript | LOC_Os06g45540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATCTGCCCCCACTGAGCCCCCTCCCACCGCCAACACCCTCTCCTCCAG GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGEST: gi|2310310|gb|C26465.1|C26465
genomic: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGgtaatcaatc ... gtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAG
EST: CATCCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAG GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGEST: gi|88430800|gb|CI596914.1|CI596914
genomic: CATC-TGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGgtaatcaatc ... gtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAG
EST: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAG GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGEST: gi|86821863|gb|CI309288.1|CI309288
genomic: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGgtaatcaatc ... gtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAG
EST: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAG GTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGEST: gi|88331101|gb|CI639512.1|CI639512
genomic: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGgtaatcaatc ... gtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAG
EST: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAG GTTAGGAGGTATGTGTACAACGAAGTTGTTCGCCTGGA
genomic: GCATCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGgtaatcaatc ... gtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGA
acggtaccgtacgtataagtatactgtgcattgaagtgcttatacgtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAG
tataagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaacgatgggtccgaagattcttttactagcactagaattaaacggtaccgtacgtataagtatactgtgcattgaagtgcttatacgtgtatatagGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
tgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat