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gtatgcatcaaaagatagttcatgagatacatattatgatcatgttgctcttactggacctcatctgaatgaccaacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTTCTGAGCTGATTGTTGCCTTCTCTCGTGAAGGACCAGCCAAAGAATACG
species | Oryza sativa |
transcript | LOC_Os04g55960.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|58666486|gb|CK055172.1|CK055172
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|163926612|gb|EG713628.1|EG713628
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAATTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|29674228|gb|CB670503.1|CB670503
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|163929241|gb|EG712694.1|EG712694
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|33793723|gb|CF322744.1|CF322744
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|58673422|gb|CK062108.1|CK062108
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTEST: gi|27576047|gb|CA998741.1|CA998741
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTT
EST: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGACGAGTTGCAAAACTTCATT
genomic: TTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatca ... caacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATT
acatattatgatcatgttgctcttactggacctcatctgaatgaccaacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTTCTGAGCTGATTGTTGCCTTCTCTCGTGAAGGACCAGCCAAAGAATACG
ctcttac putative branch site (score: 78)
ttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatcaaaagatagttcatgagatacatattatgatcatgttgctcttactggacctcatctgaatgaccaacctgcagGACTACATATATGAAGACGAGTTGCAAAACTTCATTCAGGAGGGTGCACTTTCTGAGCTGATTGTTGCCTTCTCTCGTGAAGGACCAGCCAAAGAATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA