1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GATGGCTCCTTCCAGAATTCATGTAACATGTGCGTTAGTTTATGGACCTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttcttgtacaaattataactctctctctatatatctctatattgcattgcctgcaatgacaatgagaaggtttcctacagcagtttgacttattcctcctccacaatatctactttgtag
species | Oryza sativa |
transcript | LOC_Os04g55960.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTATEST: gi|58666486|gb|CK055172.1|CK055172
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTATEST: gi|163926612|gb|EG713628.1|EG713628
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTATEST: gi|29674048|gb|CB670323.1|CB670323
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCA-TTTATEST: gi|58681936|gb|CK070623.1|CK070623
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTATEST: gi|58673422|gb|CK062108.1|CK062108
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTATEST: gi|27576047|gb|CA998741.1|CA998741
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
EST: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAG AACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
genomic: CTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttct ... tactttgtagAACGCAATCCCATCAGAATATAGTGAAGAGTGTAGCTGGGCACCAATTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGCTCCTTCCAGAATTCATGTAACATGTGCGTTAGTTTATGGACCTACACCAACGGGAAGGATTCACCAAGGAGTTTGTTCGACATGGATGAAGgtgagtttcttgtacaaattataactctctctctatatatctctatattgcattgcctgcaatgacaatgagaaggtttcctacagcagtttgacttattcctcctccacaatatctactttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA