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GCTGCTTTGGTTGCTTTAGCTGCTCATGCGTCTGACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctttctagttagaacttccattctaggatcttttaagtggtatatatattctctgctgaccgctagacttgcatgtatacag
species | Oryza sativa |
transcript | LOC_Os04g55960.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|29674048|gb|CB670323.1|CB670323
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|58661320|gb|CK050000.1|CK050000
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|33797029|gb|CF324379.1|CF324379
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|33676427|gb|CF304666.1|CF304666
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|58695058|gb|CK083745.1|CK083745
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCACATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTEST: gi|88688747|gb|CI732323.1|CI732323
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCA-ATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|58681936|gb|CK070623.1|CK070623
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|58655931|gb|CK044611.1|CK044611
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTTEST: gi|58654591|gb|CK043271.1|CK043271
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
EST: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAG GATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
genomic: ACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctt ... atgtatacagGATGAATATTCTCAATGGGTAGTAGCTAGCCAAAGAAGCCTTCTTGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTTTGGTTGCTTTAGCTGCTCATGCGTCTGACCTAGCTGAAGCTGAAAGATTGAGATTTTTGGCTTCCCCTGCTGGAAAGgtagtgcctttctagttagaacttccattctaggatcttttaagtggtatatatattctctgctgaccgctagacttgcatgtatacag
- - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA