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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgcctactgctggcaataatagttatacaccgttcttaaatatcaaaggtttcatcataggaaaaacaaataatctatttctgtggtgcag

Basic information

species Oryza sativa
transcript LOC_Os04g52640.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52640.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G126858_T02 (Zea mays), 5'ss of exon 10
GCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgc--ctactgctggcaataatagttatacaccgttcttaaatatcaaaggtttcatcataggaaaaacaaataatctatttctgtggtgcag----------
|||||||||||| ||||| || |||||||||||||||   | |||| |||||||||| ||  |||||| |||||||||      | || ||| || | ||  ||   | | ||| ||||||| | ||  |  || |||      |  ||| ||||||||||||| | |||          
GCGGTTTCAAGGCAATTCATTCCAAGGTCCACTTCCAAGCACTCTTGCTAATCTTGTTCAGCTAACAAGCTTgtaagtatgatcattggtggtaagagtatctaagtagcattcctaaatattagag--tgtataata------atcaattatctatttctgtgattcagacgaataggt

upper sequence: LOC_Os04g52640.3 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G155837_T02 (Zea mays), 5'ss of exon 9
GCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgcctactgctggcaataatagttatacaccgttcttaaatatcaaaggtttcatcataggaaaaacaaataatctatttctgtggtgcag
|||||||||||| ||||| |||||||||||||||||||| | |||||||||||| |||||| |||||| ||||||||       |  |||| | ||||  ||   |   ||||  | | |  || ||| | |  | ||||     ||  | |||||||||||||||||
GCGGTTTCAAGGCAATTCATTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTCGTCCAACTAACAAGCTTgtaag-------taatggctagaataactaagtattattctctagt-tgtaatgttactttct-ggaagtgtgaagtacctatttctgtggtgcag