1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...aaaactcataaaacatctcttttggatattcaataaaactaatattgtcgatatctgatttggtcttgtttcagaaatttatcacataattttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACAT
species | Oryza sativa |
transcript | LOC_Os04g52640.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT GGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAEST: gi|88347608|gb|CI634293.1|CI634293
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... tttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCA
EST: AGTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT GGANTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTEST: gi|88334354|gb|CI642599.1|CI642599
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... tttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGT
EST: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT GGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACATGACTTEST: gi|88380887|gb|CI634912.1|CI634912
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... tttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACATGACTT
EST: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT GGACTATACCATCGTTCATTGGGGAG
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... tttttggtagGGACTATACCATCGTTCATTGGGGAG
tgtcgatatctgatttggtcttgtttcagaaatttatcacataattttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACAT
atctgat putative branch site (score: 4)
tttttt putative PPT
tttcagaaatttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaactcataaaacatctcttttggatattcaataaaactaatattgtcgatatctgatttggtcttgtttcagaaatttatcacataattttttggtagGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - cataaaa
- - - - - - - - -tcttttg
- - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacataa