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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcctccttttgttttactagagttgagacactactagtttaatgtatcactaaataaatgataatctaaatgacaaactacatctatgaatctgtagGCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTT

Basic information

species Oryza sativa
transcript LOC_Os04g52640.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52640.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G155837_T02 (Zea mays), 3'ss of exon 8
----------ttttcctccttttgttttactagagttgagacactactagtttaatgtatcactaaataaatgataatctaaatgacaaactacatctatgaatctgtagGCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTT
          | ||||||||  |   ||      ||  || || ||       |||| |||  |||| |||||||  | || ||   ||  |  || ||  | | ||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||| |||||| |||||| |||
taaagaaatgtcttcctcctcctcccttgactaggt--agtcagta-------aatgcatctgtaaagaaatgatgctttagatagtaacatgaat-tacaattttgtagGCGGTTTCAAGGCAATTCATTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTCGTCCAACTAACAAGCTT

upper sequence: LOC_Os04g52640.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 9
ttttcctccttttgttttactagagttgagaca--ctactagtttaatgtatcactaaataaatgataatctaaatgacaaactacatctatgaatctgtagGCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTT
 | |   | | | | |||| |    ||        | |  | |||    | |   |   |   | ||  |||  |     ||| ||| |  | |    | |||||||||||||| ||||| || |||||||||||||||   | |||| |||||||||| ||  |||||| |||
-tgtatccatatagatttatttagtttatttttaccaaagaatttctcttgtgggtctgttctttatt-tctttacacataacaacaacgctaatatggcagGCGGTTTCAAGGCAATTCATTCCAAGGTCCACTTCCAAGCACTCTTGCTAATCTTGTTCAGCTAACAAGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatcactaaataaatgataatctaaatgacaaactacatctatgaatctgtagGCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTT
        taaataaatgataatc  TA-rich tract